SRR1233098_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1233098_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	43920645
Sequences flagged as poor quality	0
Sequence length	101
%GC	35

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC	170472	0.38813637641250487	Illumina Single End PCR Primer 1 (100% over 50bp)
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	103993	0.23677475592628477	No Hit
CTTTCCTTTAGGCATTCCGGTGTTGGGTTAACAGAGAAGTTATAGGTGGA	65504	0.14914170773220659	No Hit
ATTTAATACGACTCACTATAGGGAATTTAATACGACTCACTATAGGGAAT	64243	0.1462706205703491	No Hit
CTCATCAATAAATGGAGACGTATAGGAAAAGTCAGACTACGTCTACAAAA	64120	0.14599057003830432	No Hit
ATTAAATTCCCTATAGTGAGTCGTATTAAATTCCCTATAGTGAGTCGTAT	62980	0.14339497974130389	No Hit
CTTTGTTAAGTTAGGTTAGTAATAGGCAAAACAAACAAACAAATTTTATT	62905	0.14322421722176437	No Hit
CTCCACTCATGAGCAGTCCCCTCCCTAGGACTTAAAACTGATGCCATCCC	54321	0.12367987765207	No Hit
GTCTTTGTTAAGTTAGGTTAGTAATAGGCAAAACAAACAAACAAATTTTA	50612	0.1152351018524432	No Hit
CTGAGAAGTAATCATTGCAGGAGCAGTGTAACTCGACAAAGCTCTCGAAT	47065	0.10715917309502172	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTTTTTT	782490	48.963615	1
CGCGTGT	27975	48.336536	1
AGAGCGT	48375	43.050846	9
AGATCGG	49595	43.012775	1
GATCGGA	50785	42.245037	2
ATCGGAA	52745	40.802113	3
CGCCGTA	30360	38.929604	46-47
CCGTATC	32060	37.19713	48-49
AAGAGCG	58130	36.78983	8
GCGTGTT	42030	36.502594	2
CGGAAGA	59800	36.09063	5
TCGGAAG	60425	35.628357	4
GTCGCCG	33145	35.02297	44-45
GCCGTAT	32010	32.966854	48-49
GGTCGCC	31505	32.880497	44-45
TGGTCGC	34290	32.166584	42-43
TAGGCAT	21955	32.00801	9
TCGGTGG	37780	31.913176	38-39
TCTCGGT	36890	31.820267	36-37
AGACGGC	6985	31.72397	9