SRR1233082_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1233082_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	57259584
Sequences flagged as poor quality	0
Sequence length	101
%GC	37

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC	219625	0.38356024381874654	Illumina Single End PCR Primer 1 (100% over 50bp)
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	110201	0.1924586109462479	No Hit
ATTTAATACGACTCACTATAGGAATTTAATACGACTCACTATAGGAATTT	94536	0.1651007454053456	No Hit
GTCGTATTACCTATAGTGAGTCGTATTACCTATAGTGAGTCGTATTACCT	81902	0.14303631685483428	No Hit
GTCGTATTAAATTCCTATAGTGAGTCGTATTAAATTCCTATAGTGAGTCG	81808	0.14287215219726362	No Hit
ATTAAATTCTCTATAGTGAGTCGTATTAAATTCTCTATAGTGAGTCGTAT	79024	0.1380100840411275	No Hit
ATTTAATACGACTCACTATAGAGAATTTAATACGACTCACTATAGAGAAT	75625	0.13207395988067255	No Hit
ATTAAATTCCTATAGTGAGTCGTATTAAATTCCTATAGTGAGTCGTATTA	71479	0.12483325062228885	No Hit
GTCGTATTATCCCTATAGTGAGTCGTATTATCCCTATAGTGAGTCGTATT	65702	0.11474410991180098	No Hit
CTCACTATAGGTAATACGACTCACTATAGGTAATACGACTCACTATAGGT	59410	0.10375555644972902	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGTGT	43865	66.94675	1
GCGTGTT	59670	48.936497	2
GTTTTTT	960455	48.304092	1
AGATCGG	64955	43.08762	1
CGCCGTA	44895	39.731087	46-47
GTCGCCG	44710	38.874966	44-45
AGAGCGT	70270	38.848873	9
AAGAGCG	71865	38.805943	8
CCGTATC	46640	38.7178	48-49
GATCGGA	73335	38.08719	2
ATCGGAA	75005	37.410446	3
TCGGAAG	75060	37.293133	4
CGGAAGA	77390	36.212055	5
TCGGTGG	49750	36.069473	38-39
TGGTCGC	47225	34.881435	42-43
TCTCGGT	51070	34.35691	36-37
CGTGTTT	91755	32.53939	3
GATCTCG	58590	32.20421	34-35
AGCGTCG	58470	30.8286	10-11
GGTGGTC	53965	30.756569	40-41