Basic Statistics
Measure | Value |
---|---|
Filename | SRR1233076_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 36150104 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGTGATCTCGTATG | 196914 | 0.5447121258627637 | TruSeq Adapter, Index 5 (100% over 49bp) |
CTGGAATATGGCGAGAAAACTGAAAATCACGGAAAATGAGAAATACACAC | 64657 | 0.1788570234818688 | No Hit |
AGAAAACTGAAAATCACGGAAAATGAGAAATACACACTTTAGGACGTGAA | 44053 | 0.12186133683045558 | No Hit |
AGAAAACTGAAAATCATGGAAAATGAGAAACATCCACTTGACGACTTGAA | 38403 | 0.10623205952602516 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCGTGT | 19195 | 0.0 | 56.688747 | 1 |
GCGTGTT | 22365 | 0.0 | 45.784233 | 2 |
CGGAAGA | 66730 | 0.0 | 35.82528 | 5 |
AGATCGG | 59605 | 0.0 | 35.50637 | 1 |
TCGGAAG | 63410 | 0.0 | 35.318943 | 4 |
GATCGGA | 60985 | 0.0 | 35.09239 | 2 |
ATCGGAA | 61205 | 0.0 | 35.024197 | 3 |
GTTCGGA | 2805 | 0.0 | 34.726303 | 2 |
GTTTTTT | 360675 | 0.0 | 31.270588 | 1 |
CGTGTTT | 34735 | 0.0 | 29.195795 | 3 |
CTGGAAT | 95880 | 0.0 | 28.838717 | 1 |
GAAGAGC | 84170 | 0.0 | 28.439745 | 7 |
AGAGCAC | 85250 | 0.0 | 28.163023 | 9 |
TATGCCG | 50665 | 0.0 | 27.512033 | 46-47 |
TGCCGTC | 51035 | 0.0 | 27.201958 | 48-49 |
CCGTCTT | 52520 | 0.0 | 26.37502 | 50-51 |
CGTATGC | 53310 | 0.0 | 26.244318 | 44-45 |
CTCGTAT | 52350 | 0.0 | 26.185 | 42-43 |
ATCTCGT | 52960 | 0.0 | 25.426245 | 40-41 |
AGTTCGG | 3720 | 0.0 | 25.31344 | 1 |