Basic Statistics
Measure | Value |
---|---|
Filename | SRR1233075_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 37709170 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTGGAATATGGCGAGAAAACTGAAAATCACGGAAAATGAGAAATACACAC | 127578 | 0.3383208911784587 | No Hit |
AGAAAACTGAAAATCATGGAAAATGAGAAACATCCACTTGACGACTTGAA | 62645 | 0.16612670074679448 | No Hit |
ATTAAATTCCCTATAGTGAGTCGTATTAAATTCCCTATAGTGAGTCGTAT | 52298 | 0.1386877515469049 | No Hit |
GTCGTATTACAATCTATAGTGAGTCGTATTACAATCTATAGTGAGTCGTA | 45375 | 0.12032882187542182 | No Hit |
ATTTAATACGACTCACTATAGGGAATTTAATACGACTCACTATAGGGAAT | 42882 | 0.11371769784378706 | No Hit |
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 41262 | 0.1094216605669125 | No Hit |
AGAAAACTGAAAATCACGGAAAATGAGAAATACACACTTTAGGACGTGAA | 41053 | 0.10886741872069845 | No Hit |
CTCATTTTCCGTGATTTTCAGTTTTCTCGCCATATTCCAGGTCCTTCAGT | 39017 | 0.1034682015011203 | No Hit |
GTCGTATTAAATTCCCTATAGTGAGTCGTATTAAATTCCCTATAGTGAGT | 38157 | 0.1011875891195696 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCGTGT | 26260 | 0.0 | 68.408966 | 1 |
GCGTGTT | 32435 | 0.0 | 54.991283 | 2 |
CGTGTTT | 50025 | 0.0 | 35.91967 | 3 |
CTGGAAT | 147770 | 0.0 | 34.369354 | 1 |
GTTTTTT | 424260 | 0.0 | 33.16785 | 1 |
CGGCGAG | 3060 | 0.0 | 31.388874 | 1 |
CGGACGT | 1470 | 0.0 | 25.230335 | 1 |
GTCGCCG | 5710 | 0.0 | 24.8234 | 44-45 |
CTGGCGA | 3395 | 0.0 | 23.94981 | 1 |
CCGTATC | 6430 | 0.0 | 23.488825 | 48-49 |
GAATATG | 246135 | 0.0 | 22.731766 | 4 |
CTCGTAT | 2915 | 0.0 | 22.34744 | 1 |
GGAATAT | 264110 | 0.0 | 22.03503 | 3 |
CGCCGTA | 6840 | 0.0 | 21.837828 | 46-47 |
TGGAATA | 269000 | 0.0 | 21.720028 | 2 |
CCGAAAC | 4375 | 0.0 | 20.960072 | 2 |
TATGGCG | 220295 | 0.0 | 20.767347 | 7 |
TGGCGAG | 216805 | 0.0 | 20.712814 | 9 |
ATGGCGA | 222980 | 0.0 | 20.541388 | 8 |
TGGTCGC | 6640 | 0.0 | 20.234787 | 42-43 |