SRR1233063_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1233063_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	73939087
Sequences flagged as poor quality	0
Sequence length	101
%GC	38

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC	888383	1.2015065860902503	Illumina Single End PCR Primer 1 (100% over 50bp)
CTGGAATATGGCGAGAAAACTGAAAATCACGGAAAATGAGAAATACACAC	178290	0.24113091902257328	No Hit
GGAAAACTGAAAAAGGTGGAAAATTTAGAAATGTCCACTGTAGGACGTGG	92148	0.12462691079753256	No Hit
AGAAAACTGAAAATCACGGAAAATGAGAAATACACACTTTAGGACGTGAA	84222	0.11390727613393441	No Hit
AGAAAACTGAAAATCATGGAAAATGAGAAACATCCACTTGACGACTTGAA	83895	0.11346502019966788	No Hit
ATTTAATACGACTCACTATAGGGAATTTAATACGACTCACTATAGGGAAT	83343	0.1127184597234748	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	78767	0.10652958157300481	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CCGATCT	9120	56.811913	2
CGCGTGT	48625	54.740143	1
TCCGATC	9560	54.02343	1
GCGTGTT	61370	41.63227	2
AGAGCGT	253295	40.27795	9
CCGTATC	137100	40.208965	48-49
CGCCGTA	137220	40.07601	46-47
GTCGCCG	137060	39.69201	44-45
CTGGAAT	195910	38.70599	1
TGGTCGC	138735	38.11404	42-43
CGTATCA	135875	37.882603	50-51
AAGAGCG	271970	37.795513	8
TCGCCGT	135040	37.40737	46-47
TCGGTGG	149625	36.77859	38-39
GGTCGCC	139450	36.704308	44-45
GTTTTTT	973595	36.221504	1
GTGGTCG	139405	36.118706	42-43
GCCGTAT	142810	36.069782	48-49
TCTCGGT	153505	35.33851	36-37
GGTGGTC	152130	34.82823	40-41