SRR1233046_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1233046_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	38869220
Sequences flagged as poor quality	0
Sequence length	101
%GC	32

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	288565	0.7423997703066848	No Hit
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	138396	0.35605551127601737	No Hit
CGCGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	81083	0.20860464912853924	No Hit
CGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	74067	0.19055437695945532	No Hit
CTCGAGATGATTGTCATAAGCTTCTTGCAATACAAATGTTTTCTCTCAAA	62816	0.161608594152391	No Hit
GTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	57075	0.14683855245873212	No Hit
CTTGAAACCAATTTTAGGGGGTTCGATTCCTTCCTTTCTTATTTTACTTT	41210	0.1060221944253062	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGTGT	96895	61.87776	1
GCGTGTT	111960	53.822426	2
CGTGTTT	195345	37.92383	1
CCCGAAA	7070	36.614277	1
CGCCGTA	9835	36.08585	46-47
CCGAAAC	7085	35.664734	2
GTCGCCG	10580	34.62012	44-45
CGCGCGT	1095	32.9665	1
CGAAACC	7825	32.352665	3
GAGCGGC	2890	32.027283	9
CCGTATC	11300	31.807707	48-49
TCGGTGG	13510	31.097618	38-39
CGGGTGT	2885	30.457851	1
CTCGAGA	28135	29.830671	1
TCTCGGT	12645	29.210167	36-37
CGGGCCT	2770	28.978792	1
GTGTTTT	367855	28.916637	1
TCGAGAT	28910	28.849855	2
GATCTCG	13770	28.709528	34-35
CGAGATG	28860	28.389647	3