SRR1233027_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1233027_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	85591324
Sequences flagged as poor quality	0
Sequence length	101
%GC	38

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTTGCTTCAAAACGAGAAGTAATATCAGTATCGTATGCTTCAACAAATT	237689	0.27770221196718486	No Hit
CCGAAACCAAACGAGCTACCTAAAAACAATTTTATGAATCAACTCGTCTA	233396	0.2726865166847986	No Hit
CTTTCCTTTAGGCATTCCGGTGTTGGGTTAACAGAGAAGTTATAGGTGGA	147402	0.17221605311304683	No Hit
CTTGAAACCAATTTTAGGGGGTTCGATTCCTTCCTTTCTTATTTTACTTT	141288	0.16507280574372232	No Hit
CCCGAAACCAAACGAGCTACCTAAAAACAATTTTATGAATCAACTCGTCT	138138	0.1613925261864158	No Hit
CTTTTGCATAATGAACTAACTAGAAAACTTCTAACTAAAAGAATTACAGC	136618	0.15961664525717584	No Hit
GTTTTATTTAATCAACATAACCATATCCAATAAAATGCATCTTCAGAAAA	123444	0.1442248983086183	No Hit
CCTGGATGGAAATTTGCATCAAACACTACAATAGTCAGTCGGATTTATTG	113607	0.13273191100537246	No Hit
CTTCAACAAATTTAGAATGACTTCATGGCTGCCCTCCACCATATCACACA	112928	0.1319386063007975	No Hit
CTTAAATTCATTTTTTGGGTAACCAGCTATCACCAAGCTCGTTAGGCTTT	106191	0.12406748141902794	No Hit
CTCCACTCATGAGCAGTCCCCTCCCTAGGACTTAAAACTGATGCCATCCC	93123	0.10879957879843054	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGTGT	53655	66.82877	1
GCGTGTT	67035	52.90752	2
GTTTTTT	1323240	42.632202	1
CAAAACG	76385	40.29437	9
CGTGTTT	103190	35.041996	3
AGACGGC	15595	34.934574	9
CCGAAAC	87200	32.148964	1
CCTTTAG	64650	31.349785	5
TCGTCTA	67630	31.198631	44-45
CTAACGA	64240	30.280914	94-95
ACTCGTC	71900	29.54461	42-43
TAACGAG	57865	29.045357	94-95
TAGGCAT	68265	28.798824	9
CCCGAAA	58085	28.72754	1
CGAAACC	97695	28.451479	2
TTTAGGC	71965	28.24229	7
CTTTGCT	123565	27.953918	1
GTATCGT	53650	27.57776	28-29
TATCGTA	52515	27.178799	30-31
TTGCTTC	113625	27.108574	3