SRR1233026_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1233026_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	114736695
Sequences flagged as poor quality	0
Sequence length	101
%GC	37

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCGAAACCAAACGAGCTACCTAAAAACAATTTTATGAATCAACTCGTCTA	508466	0.44315900854560963	No Hit
CCCGAAACCAAACGAGCTACCTAAAAACAATTTTATGAATCAACTCGTCT	319168	0.2781743016042078	No Hit
CTTTCCTTTAGGCATTCCGGTGTTGGGTTAACAGAGAAGTTATAGGTGGA	258159	0.22500125177912786	No Hit
CTTTTGCATAATGAACTAACTAGAAAACTTCTAACTAAAAGAATTACAGC	250384	0.2182248669442675	No Hit
CTTAAATTCATTTTTTGGGTAACCAGCTATCACCAAGCTCGTTAGGCTTT	248633	0.21669876407020439	No Hit
CGAAACCAAACGAGCTACCTAAAAACAATTTTATGAATCAACTCGTCTAT	173992	0.15164459809479436	No Hit
CTATCACCAAGCTCGTTAGGCTTTTCACCTCTACCTAAAAATCTTCTCAC	167827	0.14627142606818158	No Hit
CTTTGCTTCAAAACGAGAAGTAATATCAGTATCGTATGCTTCAACAAATT	165348	0.14411082696778044	No Hit
CTTGAAACCAATTTTAGGGGGTTCGATTCCTTCCTTTCTTATTTTACTTT	149205	0.13004122177303434	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGTGT	66965	72.07801	1
GCGTGTT	90175	53.697754	2
GTTTTTT	1863465	37.765713	1
TAACGGC	20640	35.691006	9
CGTGTTT	139855	35.276382	3
CAAAACG	82400	34.64208	9
CCGAAAC	173625	33.626987	1
TCGTCTA	151380	32.603085	44-45
CCTTTAG	120655	31.946636	5
ACTCGTC	154895	31.875551	42-43
CTAACGA	140605	31.157099	94-95
CCCGAAA	115365	31.129894	1
TAACGAG	117545	30.585192	94-95
TAGGCAT	127280	29.808119	9
CGAAACC	195780	29.46171	2
TTAGGCA	130810	29.083517	8
CCAAACG	216410	28.90747	7
GCCTAAC	153030	28.367277	92-93
TTTAGGC	138475	28.156229	7
GTCTATG	177035	27.983665	46-47