Basic Statistics
Measure | Value |
---|---|
Filename | SRR1161549_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 41751147 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 666099 | 1.5954028759976344 | No Hit |
CAGTCCGACGATCGTCGGACTGTAGAACTCTGAACGTGTAGATCTCGGTGG | 74315 | 0.17799510993075232 | Illumina RNA PCR Primer (100% over 37bp) |
GTAACTTTTGTGTATGTACCTAGCTGTACTATAAGTAGTTGGTTTGTATGA | 49532 | 0.11863626165767374 | No Hit |
GTCCGACGATCGTCGGACTGTAGAACTCTGAACGTGTAGATCTCGGTGGTC | 43205 | 0.10348218696842029 | Illumina RNA PCR Primer (100% over 39bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGGCTCA | 20840 | 0.0 | 32.063065 | 1 |
TACCTAG | 8745 | 0.0 | 28.9687 | 17 |
ACCTAGC | 9090 | 0.0 | 28.01659 | 18 |
GTACCTA | 9175 | 0.0 | 27.661905 | 16 |
TAAGTAG | 9445 | 0.0 | 26.730839 | 32 |
TAGTTGG | 9920 | 0.0 | 25.496435 | 36 |
ATGTACC | 10015 | 0.0 | 25.25591 | 14 |
ATAAGTA | 10700 | 0.0 | 23.888288 | 31 |
CCTAGCT | 10665 | 0.0 | 23.87912 | 19 |
GTACTAT | 10880 | 0.0 | 23.758764 | 26 |
CTATAAG | 11545 | 0.0 | 22.293478 | 29 |
TGTACTA | 11755 | 0.0 | 21.837141 | 25 |
TGGTCGC | 9725 | 0.0 | 21.467978 | 45 |
TAGCTGT | 12835 | 0.0 | 20.420334 | 21 |
TATGTAC | 12560 | 0.0 | 20.389353 | 13 |
GTAGTTG | 13170 | 0.0 | 19.922213 | 35 |
CTAGCTG | 13025 | 0.0 | 19.915184 | 20 |
TATAAGT | 12985 | 0.0 | 19.632229 | 30 |
AAGTAGT | 14220 | 0.0 | 18.387867 | 33 |
GGTGGTC | 27715 | 0.0 | 18.377832 | 45 |