FastQCFastQC Report
Thu 26 May 2016
SRR1161549_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1161549_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41751147
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT6660991.5954028759976344No Hit
CAGTCCGACGATCGTCGGACTGTAGAACTCTGAACGTGTAGATCTCGGTGG743150.17799510993075232Illumina RNA PCR Primer (100% over 37bp)
GTAACTTTTGTGTATGTACCTAGCTGTACTATAAGTAGTTGGTTTGTATGA495320.11863626165767374No Hit
GTCCGACGATCGTCGGACTGTAGAACTCTGAACGTGTAGATCTCGGTGGTC432050.10348218696842029Illumina RNA PCR Primer (100% over 39bp)

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGGCTCA208400.032.0630651
TACCTAG87450.028.968717
ACCTAGC90900.028.0165918
GTACCTA91750.027.66190516
TAAGTAG94450.026.73083932
TAGTTGG99200.025.49643536
ATGTACC100150.025.2559114
ATAAGTA107000.023.88828831
CCTAGCT106650.023.8791219
GTACTAT108800.023.75876426
CTATAAG115450.022.29347829
TGTACTA117550.021.83714125
TGGTCGC97250.021.46797845
TAGCTGT128350.020.42033421
TATGTAC125600.020.38935313
GTAGTTG131700.019.92221335
CTAGCTG130250.019.91518420
TATAAGT129850.019.63222930
AAGTAGT142200.018.38786733
GGTGGTC277150.018.37783245