Basic Statistics
Measure | Value |
---|---|
Filename | SRR2048257_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1702900 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATATCTCGAGGGCGCGCCGGATCCTTTTTTTTTTTTTTTTTTTTTTTTTT | 4694 | 0.27564742498091493 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCGACG | 7910 | 0.0 | 91.12586 | 1 |
TCGACGG | 8485 | 0.0 | 85.106064 | 2 |
TATCTCG | 2260 | 0.0 | 83.664925 | 2 |
CGACGGC | 8870 | 0.0 | 81.46563 | 3 |
ACGGCGC | 9015 | 0.0 | 80.31341 | 5 |
GACGGCG | 9080 | 0.0 | 79.68615 | 4 |
ATATCTC | 2375 | 0.0 | 79.425415 | 1 |
CGGCGCG | 9140 | 0.0 | 79.312 | 6 |
ATCTCGA | 2515 | 0.0 | 75.370895 | 3 |
TCTCGAG | 1950 | 0.0 | 72.84595 | 4 |
AGGGCGC | 2030 | 0.0 | 70.42048 | 9 |
CTCGAGG | 2045 | 0.0 | 69.46191 | 5 |
TCGAGGG | 2070 | 0.0 | 68.84643 | 6 |
CGAGGGC | 2065 | 0.0 | 68.77703 | 7 |
CGCGCCG | 10945 | 0.0 | 66.60719 | 9 |
GCGCGCC | 11260 | 0.0 | 64.79173 | 8 |
GGCGCGC | 11265 | 0.0 | 64.68245 | 7 |
CTCGACG | 775 | 0.0 | 61.913944 | 5 |
GAGGGCG | 2325 | 0.0 | 61.8994 | 8 |
TCTCGAC | 925 | 0.0 | 51.873848 | 4 |