Basic Statistics
Measure | Value |
---|---|
Filename | SRR2048245_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 9803685 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATATCTCGAGGGCGCGCCGGATCCTTTTTTTTTTTTTTTTTTTTTTTTTT | 17335 | 0.1768212666971654 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCGACG | 32265 | 0.0 | 91.91965 | 1 |
TCGACGG | 32830 | 0.0 | 90.43715 | 2 |
CGACGGC | 34315 | 0.0 | 86.45422 | 3 |
ACGGCGC | 36070 | 0.0 | 82.1951 | 5 |
GACGGCG | 36090 | 0.0 | 82.14954 | 4 |
CGGCGCG | 36340 | 0.0 | 81.40141 | 6 |
TATCTCG | 7090 | 0.0 | 78.71543 | 2 |
CGCGCCG | 43630 | 0.0 | 68.27931 | 9 |
GGCGCGC | 44175 | 0.0 | 67.50144 | 7 |
GCGCGCC | 44265 | 0.0 | 67.321266 | 8 |
ATCTCGA | 8595 | 0.0 | 65.04274 | 3 |
TCTCGAG | 8405 | 0.0 | 60.69247 | 4 |
AGGGCGC | 8535 | 0.0 | 59.601093 | 9 |
TCGAGGG | 8650 | 0.0 | 58.58907 | 6 |
CGAGGGC | 8995 | 0.0 | 56.39471 | 7 |
ATATCTC | 10145 | 0.0 | 55.71499 | 1 |
CTCGAGG | 9405 | 0.0 | 54.138256 | 5 |
GAGGGCG | 9555 | 0.0 | 53.089527 | 8 |
CTCGACG | 1025 | 0.0 | 48.655697 | 5 |
TCCATAT | 40935 | 0.0 | 36.31287 | 18-19 |