FastQCFastQC Report
Thu 26 May 2016
SRR1562284_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1562284_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19280661
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGACCTA15950.08.9328274
GTCGGAT23300.08.5609451
TACGCAC15202.5465852E-117.81132569
CCGGTAT31900.07.59290271
GCGGGAT50900.07.37119051
GCCGGAT51750.07.34189131
CGCGAAT11001.0565036E-67.3398061
CGACCGT15804.8748916E-107.21410471
CCGGGAT66250.07.1687331
CCGGAAT45700.06.8589251
GCGGAAT29350.06.79625271
CGGGTAT23251.8189894E-126.5366521
CGGTATT33450.06.53115562
CGCGTTT14653.1971467E-76.48366641
GTCGGAA38900.06.47074941
AATCGAA40400.06.4656125
CCCGGAT71300.06.3945511
CTCGGAT63400.06.29242941
CCGGATA36350.06.27140952
GCGCGTT12901.2765677E-56.25874851
Produced by FastQC (version 0.11.5)