FastQCFastQC Report
Thu 26 May 2016
SRR1562284_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1562284_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19280661
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGACCTA13850.010.9744244
CGTATCG19900.08.3540393
CGCGAAT9256.055161E-78.222941
TACCGTA18150.08.1127229
GTCGGAT22300.08.1007951
CCGGGAT63450.08.01681
TACGCAC16700.07.96385159
CGGCGAA30600.07.92314531
GTCGGTT28450.07.68642571
CGGGTTT42850.07.65503451
CCCGTAT28450.07.51932951
CGGGGTT69400.07.329481
GTCCGTT22400.07.2157211
CCCGGAT73250.07.13894371
GTCGATT16802.4556357E-107.07423731
CCGGAAT42400.07.06355951
CGGGGTA36750.06.9853041
GCGGTAT20501.8189894E-126.95690871
GCCGTAT23500.06.87796451
GCGAACG16206.188202E-96.743643
Produced by FastQC (version 0.11.5)