FastQCFastQC Report
Thu 26 May 2016
SRR1562283_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1562283_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17773859
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCGTAT24750.09.0278191
CGACCTA13159.094947E-128.6689074
CGCGGAT27250.07.85066131
CCGGGAT58000.07.7867421
GTATCGA23450.07.69696664
GCCGTAT21650.07.68546871
GCGGGAT47950.07.5350331
GTCGGAT20850.07.52433441
GTCGGGA50500.07.3428291
GCCGGAT44850.07.20786571
GTCGGTT27800.07.1823191
TATGGCG35150.07.16191867
CGCCTAT17558.913048E-117.04297971
GTTAACG12150.07.036798516-17
GTCCGTT20401.8189894E-126.99119331
CCGCAAT30300.06.90351441
GCGGTGT37900.06.89896061
CGCAATC18001.6370905E-106.8613222
CGCTAAT11251.1370521E-56.76126051
CGGATCT64300.06.72216653
Produced by FastQC (version 0.11.5)