FastQCFastQC Report
Tue 31 May 2016
SRR1051302_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1051302_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14610788
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGGTGT36250.08.2564721
CCGTCTA15353.6379788E-128.0454374
GTCGGAT27100.07.18747761
CCGCGTA8004.8641535E-47.1248532
TCGGATT30200.06.76310542
CTCGTTT38800.06.4894231
CCCCCGT35900.06.48430731
CGGGTTT32400.06.4516321
GTCGGTA20658.913048E-116.44169141
CCGGATA22652.1827873E-116.2912612
CCCGGAT62600.06.14713341
CCCGGGA99050.06.0913161
CCCGTAT18802.0461812E-86.0647841
GCCCCGT44650.06.06478361
GTCGTTT28500.06.00094371
TCCCGTT43650.05.98498542
CCGGGAT49350.05.96851731
CGGTTTT33600.05.93737753
GCGGGTT28050.05.9278491
CCCGTCT50550.05.92081261
Produced by FastQC (version 0.11.5)