FastQCFastQC Report
Tue 31 May 2016
SRR1051291_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1051291_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17285507
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGACG113800.087.7781751
TCGACGG114050.087.587392
CGACGGC125050.080.223943
ACGGCGC132050.075.7909555
GACGGCG135750.073.760414
CGGCGCG147250.068.064156
CGCGCCG186850.056.1557049
GGCGCGC203500.051.6078267
GCGCGCC206000.051.027648
CGCCGGA181350.029.6758810-11
GCCGGAT189000.029.45486512-13
CCGGATC193400.028.01109312-13
CGGATCC215500.025.82178714-15
GCGCCGG220000.025.66065610-11
TATCTCG22950.024.4228782
TCCATAT225250.022.58478418-19
ATCTCGA52850.021.2208651
CCATATT245950.021.19575718-19
GGGCGCG51500.021.1212468
ATCCATA274650.019.05869916-17
Produced by FastQC (version 0.11.5)