FastQCFastQC Report
Wed 25 May 2016
SRR1033288_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1033288_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10927215
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGATT2500.001565977213.2248761
GTCCGAT8950.012.6654831
CCCGGAT37000.011.4887911
CTCCGAT21300.010.20027351
CGTATCG9054.9112714E-109.9082083
CCCGTAT13900.09.8540951
GTATCGA10609.094947E-129.795644
CCCGGTT26050.09.0655851
CTCGGGT30400.08.8559441
CTCGGAT30150.08.772721
CTCCGTT25850.08.7702961
AGATCGG76450.08.72639994
TCCGATT20650.08.688472
CGCGTAA4350.0094294778.686291
CGGCGAA10002.8017894E-88.5017061
CTCGGTA19500.08.4774841
CCCGTTT22900.08.456331
CGGGGTT33250.08.3809631
CCGGGAT32700.08.3774881
CTCGAGT20500.08.2943481