Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033281_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3900294 |
Sequences flagged as poor quality | 0 |
Sequence length | 75 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 15371 | 0.3940984961646481 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 5885 | 0.0 | 42.4153 | 1 |
GTATCAA | 10325 | 0.0 | 30.169111 | 1 |
GTGGTAT | 2620 | 0.0 | 26.936384 | 1 |
TGGTATC | 2660 | 0.0 | 23.913975 | 2 |
ATCAACG | 13585 | 0.0 | 23.391443 | 3 |
TCAACGC | 13755 | 0.0 | 23.099367 | 4 |
CAACGCA | 13955 | 0.0 | 22.817888 | 5 |
AACGCAG | 14450 | 0.0 | 22.203104 | 6 |
TATCAAC | 14000 | 0.0 | 22.047901 | 2 |
ACGCAGA | 16275 | 0.0 | 19.43943 | 7 |
CGCAGAG | 16360 | 0.0 | 19.233332 | 8 |
CGATACG | 110 | 8.1745046E-4 | 18.841055 | 26 |
GTACATG | 9780 | 0.0 | 18.733387 | 1 |
AGAGTAC | 16280 | 0.0 | 18.082266 | 11 |
GCAGAGT | 17380 | 0.0 | 17.669945 | 9 |
CAGAGTA | 17265 | 0.0 | 17.548615 | 10 |
GAGTACT | 12195 | 0.0 | 17.427704 | 12 |
TACATGG | 9680 | 0.0 | 17.272375 | 2 |
AGTACTT | 12495 | 0.0 | 16.76178 | 13 |
ACATGGG | 10275 | 0.0 | 16.3671 | 3 |