Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033275_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2860024 |
Sequences flagged as poor quality | 0 |
Sequence length | 75 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 11225 | 0.3924792239505682 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 4900 | 0.0 | 33.936535 | 1 |
GTATCAA | 8310 | 0.0 | 26.834448 | 1 |
ATCAACG | 10375 | 0.0 | 21.980488 | 3 |
TCAACGC | 10460 | 0.0 | 21.764395 | 4 |
CGCGTAT | 80 | 0.0029524702 | 21.496563 | 12 |
CAACGCA | 10660 | 0.0 | 21.324171 | 5 |
TATCAAC | 10505 | 0.0 | 20.959528 | 2 |
AACGCAG | 11040 | 0.0 | 20.746668 | 6 |
GTGGTAT | 2540 | 0.0 | 19.996536 | 1 |
ACGCAGA | 12590 | 0.0 | 18.111158 | 7 |
GAGTACT | 8185 | 0.0 | 17.901108 | 12 |
CGCAGAG | 12755 | 0.0 | 17.876873 | 8 |
AGAGTAC | 11950 | 0.0 | 17.844847 | 11 |
TGGTATC | 2695 | 0.0 | 17.682173 | 2 |
GTACATG | 7880 | 0.0 | 17.482544 | 1 |
AGTACTT | 8440 | 0.0 | 17.238304 | 13 |
GTACTTT | 8860 | 0.0 | 16.504587 | 14 |
GCAGAGT | 13580 | 0.0 | 16.488087 | 9 |
CAGAGTA | 13300 | 0.0 | 16.473156 | 10 |
TACATGG | 7840 | 0.0 | 16.460072 | 2 |