Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033273_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3171847 |
Sequences flagged as poor quality | 0 |
Sequence length | 75 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 12668 | 0.39938874731347385 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 4760 | 0.0 | 40.174023 | 1 |
GTATCAA | 8665 | 0.0 | 30.7763 | 1 |
GTGGTAT | 2055 | 0.0 | 28.08574 | 1 |
TGGTATC | 2135 | 0.0 | 26.21615 | 2 |
ATCAACG | 10915 | 0.0 | 24.80308 | 3 |
TCAACGC | 11135 | 0.0 | 24.372503 | 4 |
CAACGCA | 11325 | 0.0 | 23.933231 | 5 |
TATCAAC | 11370 | 0.0 | 23.360052 | 2 |
AACGCAG | 11740 | 0.0 | 23.028976 | 6 |
ACCGCGT | 150 | 7.549843E-7 | 20.63949 | 8 |
ACGCAGA | 13225 | 0.0 | 20.314358 | 7 |
CGCAGAG | 13270 | 0.0 | 20.115858 | 8 |
AGAGTAC | 13325 | 0.0 | 18.74235 | 11 |
GAGTACT | 9775 | 0.0 | 18.334774 | 12 |
CAGAGTA | 13905 | 0.0 | 18.331661 | 10 |
GCAGAGT | 14185 | 0.0 | 18.042849 | 9 |
GTACATG | 8110 | 0.0 | 17.92029 | 1 |
AGTACTT | 10185 | 0.0 | 17.327053 | 13 |
TACATGG | 8050 | 0.0 | 17.274483 | 2 |
GTACTTT | 10655 | 0.0 | 16.567205 | 14 |