Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033273_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3171847 |
Sequences flagged as poor quality | 0 |
Sequence length | 75 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 5020 | 0.0 | 42.959213 | 1 |
GTATCAA | 9070 | 0.0 | 29.91147 | 1 |
GTGGTAT | 2020 | 0.0 | 25.663465 | 1 |
TGGTATC | 2100 | 0.0 | 23.480385 | 2 |
ATCAACG | 11325 | 0.0 | 23.414051 | 3 |
TCAACGC | 11375 | 0.0 | 23.311132 | 4 |
TATCAAC | 11580 | 0.0 | 23.04734 | 2 |
CAACGCA | 11535 | 0.0 | 22.928003 | 5 |
AACGCAG | 11965 | 0.0 | 22.161652 | 6 |
ACGCAGA | 13880 | 0.0 | 18.979832 | 7 |
CGCAGAG | 13905 | 0.0 | 18.89611 | 8 |
AGAGTAC | 14110 | 0.0 | 18.084515 | 11 |
ACCGCGT | 135 | 1.5844716E-4 | 17.87939 | 8 |
GAGTACT | 10060 | 0.0 | 17.5156 | 12 |
CAGAGTA | 14750 | 0.0 | 17.439823 | 10 |
GCAGAGT | 14985 | 0.0 | 17.212078 | 9 |
CTGTCGC | 625 | 0.0 | 17.102915 | 9 |
GTACATG | 8705 | 0.0 | 17.03193 | 1 |
AGTACTT | 10415 | 0.0 | 16.885466 | 13 |
ACGAACG | 125 | 0.0019483268 | 16.551468 | 29 |