FastQCFastQC Report
Wed 25 May 2016
SRR1033270_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1033270_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3007013
Sequences flagged as poor quality0
Sequence length75
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA51100.039.0736731
GTATCAA81550.029.0164241
TATACCG1001.5717831E-524.1360265
GTGGTAT19600.023.7933161
ATCAACG102700.022.5614283
TCAACGC103250.022.4412464
TATCAAC107000.021.7192022
CAACGCA106750.021.6731665
AACGCAG110050.021.1485926
GTATACG950.00777945518.1812481
TGGTATC24700.018.1473882
GTACTAG4200.018.0946711
ACGCAGA128850.018.0093637
CGCAGAG131850.017.6257468
TACACCG2359.566065E-917.6068295
GAGTACT82450.017.43895112
AGTACTT86000.016.71908813
AGAGTAC131650.016.68374611
GCAGAGT139900.016.2911429
GTACATG99500.016.2480051