Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033256_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3897962 |
Sequences flagged as poor quality | 0 |
Sequence length | 75 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 15365 | 0.3941803434717937 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTACCG | 75 | 1.7070106E-6 | 32.111164 | 9 |
TATACCG | 210 | 0.0 | 24.57107 | 5 |
GGTATCA | 11275 | 0.0 | 24.46415 | 1 |
TAGCGTA | 90 | 2.1689375E-4 | 22.934772 | 7 |
GTATCAA | 16925 | 0.0 | 22.277893 | 1 |
GTACCGA | 110 | 3.3399425E-5 | 21.893978 | 10 |
ACCGTCC | 245 | 4.0017767E-11 | 19.658377 | 8 |
CGTTGCG | 90 | 0.0058165304 | 19.120943 | 20 |
ATCAACG | 19960 | 0.0 | 19.115705 | 3 |
TCAACGC | 20035 | 0.0 | 19.05812 | 4 |
AACGCAG | 20160 | 0.0 | 18.923624 | 6 |
CAACGCA | 20285 | 0.0 | 18.78957 | 5 |
CGTGCGA | 130 | 1.17433025E-4 | 18.592587 | 44 |
GTACATG | 18225 | 0.0 | 18.41761 | 1 |
TATCAAC | 20450 | 0.0 | 18.263437 | 2 |
TACATGG | 17765 | 0.0 | 18.224516 | 2 |
CGCGGTA | 310 | 3.6379788E-12 | 17.821466 | 43 |
ACATGGG | 18095 | 0.0 | 17.644472 | 3 |
CGTAGCG | 140 | 2.1231956E-4 | 17.208183 | 15 |
GAGTACT | 10490 | 0.0 | 16.956427 | 12 |