Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033254_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 4181034 |
Sequences flagged as poor quality | 0 |
Sequence length | 75 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 16576 | 0.3964569529929678 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 6435 | 0.0 | 38.363346 | 1 |
GTATCAA | 10915 | 0.0 | 29.020262 | 1 |
ATCAACG | 13890 | 0.0 | 23.324553 | 3 |
TCAACGC | 13895 | 0.0 | 23.263578 | 4 |
CAACGCA | 14280 | 0.0 | 22.56413 | 5 |
TATCAAC | 14160 | 0.0 | 22.072437 | 2 |
AACGCAG | 15005 | 0.0 | 21.56686 | 6 |
GTGGTAT | 2980 | 0.0 | 20.768751 | 1 |
TGGTATC | 3165 | 0.0 | 19.00318 | 2 |
ACGCAGA | 17010 | 0.0 | 18.782803 | 7 |
CGCAGAG | 17010 | 0.0 | 18.621058 | 8 |
GAGTACT | 10235 | 0.0 | 17.406723 | 12 |
GTACATG | 12650 | 0.0 | 17.316362 | 1 |
AGAGTAC | 16680 | 0.0 | 17.21732 | 11 |
AGTACTT | 10415 | 0.0 | 16.907545 | 13 |
CAGAGTA | 17750 | 0.0 | 16.644468 | 10 |
GCAGAGT | 18310 | 0.0 | 16.52987 | 9 |
TACATGG | 12650 | 0.0 | 16.352356 | 2 |
GTACTTT | 10995 | 0.0 | 15.95712 | 14 |
TATACCG | 270 | 5.4726115E-8 | 15.283565 | 5 |