Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033253_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3468238 |
Sequences flagged as poor quality | 0 |
Sequence length | 75 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 13520 | 0.3898233050903658 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 5350 | 0.0 | 37.590603 | 1 |
GTATCAA | 8915 | 0.0 | 28.647049 | 1 |
ATCAACG | 11710 | 0.0 | 22.326866 | 3 |
TCAACGC | 11715 | 0.0 | 22.314104 | 4 |
CAACGCA | 11980 | 0.0 | 21.82051 | 5 |
TATCAAC | 11775 | 0.0 | 21.59691 | 2 |
AACGCAG | 12255 | 0.0 | 21.499577 | 6 |
GTGGTAT | 2505 | 0.0 | 19.02909 | 1 |
GTACATG | 10965 | 0.0 | 18.880503 | 1 |
TATACCG | 220 | 4.3564796E-9 | 18.761465 | 5 |
ACGCAGA | 13990 | 0.0 | 18.61252 | 7 |
CGCAGAG | 14170 | 0.0 | 18.400364 | 8 |
CGAACTA | 345 | 0.0 | 18.014706 | 29 |
TACATGG | 11010 | 0.0 | 17.915579 | 2 |
AGAGTAC | 13720 | 0.0 | 17.650293 | 11 |
TACACCG | 455 | 0.0 | 17.386995 | 5 |
GAGTACT | 8320 | 0.0 | 17.281693 | 12 |
TGGTATC | 2660 | 0.0 | 17.13266 | 2 |
ACATGGG | 11430 | 0.0 | 17.12526 | 3 |
CAGAGTA | 14485 | 0.0 | 17.003334 | 10 |