Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033249_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 4210449 |
Sequences flagged as poor quality | 0 |
Sequence length | 75 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 16652 | 0.3954922622266651 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 7560 | 0.0 | 38.07723 | 1 |
GTATCAA | 14225 | 0.0 | 27.128607 | 1 |
GCTCTAG | 960 | 0.0 | 24.626032 | 1 |
CTAGACG | 85 | 1.4755204E-4 | 24.276028 | 4 |
ATCAACG | 17365 | 0.0 | 22.601864 | 3 |
TCAACGC | 17700 | 0.0 | 22.1113 | 4 |
CAACGCA | 17810 | 0.0 | 21.994043 | 5 |
GCGAACT | 1640 | 0.0 | 21.897816 | 28 |
CCGAAAT | 1610 | 0.0 | 21.664228 | 47 |
AACGCAG | 18250 | 0.0 | 21.445187 | 6 |
TCGCCCC | 1735 | 0.0 | 20.69508 | 38 |
GTACATG | 19045 | 0.0 | 20.500082 | 1 |
TATGCGC | 85 | 0.0041124374 | 20.302235 | 58 |
TATCAAC | 19215 | 0.0 | 20.044653 | 2 |
AAAGCGA | 1780 | 0.0 | 19.987268 | 25 |
TACATGG | 17800 | 0.0 | 19.802366 | 2 |
CGCACGA | 105 | 5.990087E-4 | 19.732098 | 28 |
CGGTAGA | 705 | 0.0 | 19.521965 | 14 |
CAATACG | 495 | 0.0 | 19.464668 | 17 |
AACCGGC | 730 | 0.0 | 19.3998 | 23 |