Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033245_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2154537 |
Sequences flagged as poor quality | 0 |
Sequence length | 75 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 4985 | 0.0 | 27.385292 | 1 |
GTATCAA | 7680 | 0.0 | 22.770613 | 1 |
ACCGACG | 80 | 0.0029092736 | 21.550953 | 44 |
ATCAACG | 9035 | 0.0 | 19.005867 | 3 |
TCAACGC | 9045 | 0.0 | 18.984854 | 4 |
TATCAAC | 9245 | 0.0 | 18.648745 | 2 |
CAACGCA | 9320 | 0.0 | 18.424679 | 5 |
CCGACGA | 95 | 0.007860853 | 18.148172 | 45 |
CGATGCG | 95 | 0.007860853 | 18.148172 | 44 |
AACGCAG | 9605 | 0.0 | 17.98568 | 6 |
ACAACGC | 175 | 3.2268817E-6 | 17.733356 | 8 |
TACACCG | 195 | 4.6235618E-7 | 17.682835 | 5 |
ATACCGT | 160 | 2.9658906E-5 | 17.240763 | 6 |
AGAGTAC | 9245 | 0.0 | 17.08225 | 11 |
GAGTACT | 6155 | 0.0 | 16.69455 | 12 |
GTACATG | 5485 | 0.0 | 16.256554 | 1 |
AGTACTT | 6360 | 0.0 | 15.939574 | 13 |
TATATCG | 130 | 0.0025317015 | 15.914552 | 5 |
ACGCAGA | 10825 | 0.0 | 15.799388 | 7 |
CGCAGAG | 10795 | 0.0 | 15.779411 | 8 |