Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033242_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1907111 |
Sequences flagged as poor quality | 0 |
Sequence length | 75 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 7531 | 0.3948904914291827 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 3355 | 0.0 | 41.975956 | 1 |
GTATCAA | 5770 | 0.0 | 28.505157 | 1 |
GTGGTAT | 1325 | 0.0 | 23.88161 | 1 |
TCAACGC | 7285 | 0.0 | 23.178112 | 4 |
ATCAACG | 7275 | 0.0 | 23.167587 | 3 |
TGGTATC | 1290 | 0.0 | 22.640863 | 2 |
CAACGCA | 7450 | 0.0 | 22.61861 | 5 |
TATCAAC | 7225 | 0.0 | 22.618479 | 2 |
TCTGTCG | 385 | 0.0 | 22.332624 | 8 |
AACGCAG | 7705 | 0.0 | 21.871191 | 6 |
TATAACG | 145 | 4.9140726E-7 | 21.581316 | 2 |
CTGTCGC | 450 | 0.0 | 19.873693 | 9 |
ACGCAGA | 8775 | 0.0 | 18.93043 | 7 |
CGCAGAG | 8865 | 0.0 | 18.466675 | 8 |
GAGTACT | 6225 | 0.0 | 18.344948 | 12 |
GTACATG | 5380 | 0.0 | 18.22657 | 1 |
TGTCGCC | 530 | 0.0 | 18.171883 | 10 |
GTCTCGC | 480 | 0.0 | 18.11077 | 1 |
AGAGTAC | 8770 | 0.0 | 17.531765 | 11 |
AGTACTT | 6420 | 0.0 | 17.465816 | 13 |