Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033241_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3017296 |
Sequences flagged as poor quality | 0 |
Sequence length | 75 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 11859 | 0.393034027818285 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 5255 | 0.0 | 39.007633 | 1 |
GTATCAA | 8810 | 0.0 | 27.210938 | 1 |
GTGGTAT | 2210 | 0.0 | 22.638128 | 1 |
ATCAACG | 10840 | 0.0 | 22.494234 | 3 |
TCAACGC | 11000 | 0.0 | 22.067732 | 4 |
CAACGCA | 11185 | 0.0 | 21.61051 | 5 |
CGGTACC | 240 | 1.8189894E-12 | 21.58478 | 45 |
TATCAAC | 11010 | 0.0 | 21.42297 | 2 |
AACGCAG | 11675 | 0.0 | 20.792908 | 6 |
TGGTATC | 2445 | 0.0 | 20.600906 | 2 |
GCGGTAC | 290 | 1.8189894E-12 | 19.05447 | 44 |
CGCGGTA | 225 | 5.47152E-9 | 18.419321 | 43 |
TTAACGG | 305 | 1.8189894E-12 | 18.108576 | 35 |
ACGCAGA | 13380 | 0.0 | 17.990593 | 7 |
CGCAGAG | 13445 | 0.0 | 17.801609 | 8 |
GTACATG | 9230 | 0.0 | 17.61629 | 1 |
TAACGGC | 280 | 2.5283953E-10 | 17.259737 | 36 |
GAGTACT | 8425 | 0.0 | 17.104027 | 12 |
AGAGTAC | 13205 | 0.0 | 16.720562 | 11 |
TACATGG | 9325 | 0.0 | 16.502588 | 2 |