Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033236_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2473161 |
Sequences flagged as poor quality | 0 |
Sequence length | 75 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 4330 | 0.0 | 41.096485 | 1 |
GTATCAA | 7255 | 0.0 | 26.8613 | 1 |
GTGGTAT | 1775 | 0.0 | 25.306398 | 1 |
TGGTATC | 1910 | 0.0 | 22.927631 | 2 |
ATCAACG | 8665 | 0.0 | 22.006218 | 3 |
CGTATAC | 110 | 3.282276E-5 | 21.94291 | 3 |
TCAACGC | 8680 | 0.0 | 21.928463 | 4 |
CAACGCA | 8885 | 0.0 | 21.461327 | 5 |
TATCAAC | 9040 | 0.0 | 21.360355 | 2 |
AGCGAAC | 195 | 9.404175E-10 | 21.220375 | 27 |
AACGCAG | 9260 | 0.0 | 20.592213 | 6 |
CGAACTA | 185 | 1.1848897E-8 | 20.503056 | 29 |
GCGAACT | 205 | 3.8495273E-8 | 18.50313 | 28 |
ACGCAGA | 10605 | 0.0 | 17.785477 | 7 |
CGCAGAG | 10735 | 0.0 | 17.537975 | 8 |
TATAACG | 140 | 2.0922587E-4 | 17.240858 | 2 |
GTACATG | 6400 | 0.0 | 16.574627 | 1 |
AGAGTAC | 10670 | 0.0 | 16.546387 | 11 |
GAGTACT | 7400 | 0.0 | 16.355846 | 12 |
CCGACGT | 130 | 0.0024829751 | 15.961103 | 66 |