Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033227_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 870368 |
Sequences flagged as poor quality | 0 |
Sequence length | 75 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 3405 | 0.39121383139085997 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATAACG | 80 | 3.092282E-11 | 43.49579 | 2 |
GCGTACC | 35 | 0.0013445757 | 39.446777 | 64 |
GGTATCA | 1790 | 0.0 | 37.330307 | 1 |
TATCACG | 65 | 2.1888967E-5 | 32.119965 | 2 |
ATAACGC | 135 | 9.094947E-12 | 30.577902 | 3 |
GTACCTG | 780 | 0.0 | 29.448473 | 1 |
GTATCAA | 3080 | 0.0 | 29.039948 | 1 |
GTACACG | 85 | 4.1354306E-6 | 28.66108 | 1 |
TACCTGG | 780 | 0.0 | 28.551083 | 2 |
GTATAAC | 175 | 0.0 | 27.84219 | 1 |
ACGCTAC | 75 | 6.135125E-5 | 27.617554 | 41 |
AGCGTAC | 50 | 0.0077208322 | 27.609539 | 63 |
TCTGTCG | 280 | 0.0 | 27.027117 | 8 |
TAACGCA | 210 | 0.0 | 24.568687 | 4 |
ATCAACG | 3845 | 0.0 | 23.529875 | 3 |
TCAACGC | 3845 | 0.0 | 23.527151 | 4 |
TATCAAC | 3825 | 0.0 | 23.015812 | 2 |
CAACGCA | 3925 | 0.0 | 22.959984 | 5 |
GTGGTAT | 830 | 0.0 | 22.642748 | 1 |
TGGTATC | 805 | 0.0 | 22.477325 | 2 |