Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033225_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3381929 |
Sequences flagged as poor quality | 0 |
Sequence length | 75 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 13316 | 0.3937397857849766 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 6230 | 0.0 | 40.79357 | 1 |
GTATCAA | 11250 | 0.0 | 28.771303 | 1 |
GCGAACT | 710 | 0.0 | 25.2896 | 28 |
GTGGTAT | 2585 | 0.0 | 23.670885 | 1 |
ATCAACG | 13995 | 0.0 | 23.376926 | 3 |
TCAACGC | 14280 | 0.0 | 22.881516 | 4 |
CAACGCA | 14480 | 0.0 | 22.541718 | 5 |
TGGTATC | 2615 | 0.0 | 22.465633 | 2 |
CGCGGTC | 185 | 4.820322E-10 | 22.388838 | 32 |
TATCAAC | 14575 | 0.0 | 22.06159 | 2 |
CGAACTA | 820 | 0.0 | 21.896769 | 29 |
GTACATG | 14785 | 0.0 | 21.65712 | 1 |
AACGCAG | 15195 | 0.0 | 21.618439 | 6 |
AAAGCGA | 845 | 0.0 | 21.255278 | 25 |
TACATGG | 14275 | 0.0 | 20.942377 | 2 |
CCAACGG | 875 | 0.0 | 20.907846 | 63 |
ACGGAAC | 860 | 0.0 | 20.872705 | 66 |
GGTCCGT | 150 | 7.5544995E-7 | 20.63825 | 7 |
CAACGGA | 895 | 0.0 | 20.44185 | 64 |
CGGAACA | 885 | 0.0 | 20.283083 | 67 |