Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033219_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3654603 |
Sequences flagged as poor quality | 0 |
Sequence length | 75 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 14319 | 0.3918072633333908 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGAACTA | 375 | 0.0 | 26.703154 | 29 |
GTATCAA | 8855 | 0.0 | 23.993608 | 1 |
GGTATCA | 5970 | 0.0 | 23.706257 | 1 |
GTACATG | 10555 | 0.0 | 22.698853 | 1 |
TACATGG | 10600 | 0.0 | 21.321321 | 2 |
ACATGGG | 10950 | 0.0 | 20.700089 | 3 |
ATCAACG | 10490 | 0.0 | 20.230686 | 3 |
TCAACGC | 10555 | 0.0 | 20.168499 | 4 |
CAACGCA | 10795 | 0.0 | 19.75196 | 5 |
ACGGAAC | 495 | 0.0 | 19.52993 | 66 |
AACGCAG | 11125 | 0.0 | 19.290508 | 6 |
TATCAAC | 10915 | 0.0 | 19.113234 | 2 |
CGCGTAA | 90 | 0.0058377665 | 19.108845 | 10 |
GCGAACT | 525 | 0.0 | 19.074472 | 28 |
AGCGAAC | 545 | 0.0 | 19.014137 | 27 |
GAGTACA | 7515 | 0.0 | 17.768269 | 1 |
CCAACGG | 585 | 0.0 | 17.703505 | 63 |
AGAGTAC | 11220 | 0.0 | 17.596487 | 11 |
CATGGGG | 6640 | 0.0 | 16.729216 | 4 |
ACGCAGA | 12780 | 0.0 | 16.685677 | 7 |