Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033219_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3654603 |
Sequences flagged as poor quality | 0 |
Sequence length | 75 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 6445 | 0.0 | 25.355965 | 1 |
GTATCAA | 9720 | 0.0 | 23.779446 | 1 |
GTACATG | 10520 | 0.0 | 21.577023 | 1 |
TACATGG | 10410 | 0.0 | 21.065607 | 2 |
ATCAACG | 11385 | 0.0 | 20.018705 | 3 |
TCAACGC | 11395 | 0.0 | 19.94062 | 4 |
CAACGCA | 11705 | 0.0 | 19.47142 | 5 |
ACATGGG | 10705 | 0.0 | 19.357773 | 3 |
TATCAAC | 12145 | 0.0 | 18.907942 | 2 |
AACGCAG | 12120 | 0.0 | 18.890047 | 6 |
CGAACTA | 305 | 1.8189894E-12 | 18.087881 | 29 |
GAGTACA | 7605 | 0.0 | 17.036247 | 1 |
AGAGTAC | 12240 | 0.0 | 16.761353 | 11 |
GTATAGG | 845 | 0.0 | 16.354795 | 1 |
TATACTG | 1605 | 0.0 | 16.32699 | 5 |
ACGCAGA | 14105 | 0.0 | 16.10942 | 7 |
CATGGGG | 6530 | 0.0 | 16.051956 | 4 |
GAGTACT | 8230 | 0.0 | 16.04621 | 12 |
CGCAGAG | 14260 | 0.0 | 15.692521 | 8 |
AGTACTT | 8385 | 0.0 | 15.6262245 | 13 |