Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033218_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2437452 |
Sequences flagged as poor quality | 0 |
Sequence length | 75 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 9478 | 0.38884868296893643 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 4000 | 0.0 | 39.03574 | 1 |
GTATCAA | 6790 | 0.0 | 28.783434 | 1 |
ATCAACG | 8625 | 0.0 | 23.25375 | 3 |
TCAACGC | 8710 | 0.0 | 23.100096 | 4 |
CAACGCA | 8960 | 0.0 | 22.417177 | 5 |
TATCAAC | 8725 | 0.0 | 22.279907 | 2 |
AACGCAG | 9200 | 0.0 | 21.796347 | 6 |
ACGCGCG | 80 | 0.002893296 | 21.571547 | 33 |
GTGGTAT | 1935 | 0.0 | 21.566334 | 1 |
TGGTATC | 1965 | 0.0 | 19.997831 | 2 |
CGGTTAT | 90 | 0.005699098 | 19.18821 | 24 |
ACGCAGA | 10390 | 0.0 | 19.168709 | 7 |
CGCAGAG | 10495 | 0.0 | 19.009705 | 8 |
GTACATG | 5960 | 0.0 | 18.671524 | 1 |
AGAGTAC | 10270 | 0.0 | 17.885113 | 11 |
TACATGG | 6055 | 0.0 | 17.459284 | 2 |
CAGAGTA | 10905 | 0.0 | 17.222168 | 10 |
GAGTACT | 7610 | 0.0 | 17.221111 | 12 |
TCTGTCG | 480 | 0.0 | 17.198866 | 8 |
GCAGAGT | 11155 | 0.0 | 17.021208 | 9 |