Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033217_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2500858 |
Sequences flagged as poor quality | 0 |
Sequence length | 75 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 9695 | 0.3876669527018327 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 4300 | 0.0 | 35.29809 | 1 |
GTATCAA | 7100 | 0.0 | 27.114399 | 1 |
GCGGTAT | 150 | 2.6269845E-8 | 23.208225 | 1 |
ATCAACG | 8785 | 0.0 | 22.162045 | 3 |
TCAACGC | 8910 | 0.0 | 21.923937 | 4 |
CAACGCA | 9115 | 0.0 | 21.430859 | 5 |
TATCAAC | 9020 | 0.0 | 21.147266 | 2 |
AACGCAG | 9385 | 0.0 | 20.852211 | 6 |
ACGGACG | 90 | 0.0057095024 | 19.182178 | 42 |
CGAGCCG | 165 | 1.875731E-6 | 18.769798 | 19 |
ACGCAGA | 10705 | 0.0 | 18.184603 | 7 |
CGGTGCG | 95 | 0.007978125 | 18.101746 | 7 |
GTACATG | 6215 | 0.0 | 17.980307 | 1 |
GAGTACT | 7640 | 0.0 | 17.918018 | 12 |
CGCAGAG | 10870 | 0.0 | 17.876932 | 8 |
TAACGAC | 155 | 2.2379747E-5 | 17.81547 | 54 |
AGAGTAC | 10320 | 0.0 | 17.797617 | 11 |
TACATGG | 6180 | 0.0 | 17.347721 | 2 |
AGTACTT | 7890 | 0.0 | 17.263086 | 13 |
GCAGAGT | 11415 | 0.0 | 16.69299 | 9 |