Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033213_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2413142 |
Sequences flagged as poor quality | 0 |
Sequence length | 75 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 9569 | 0.39653696301336594 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TACACCG | 165 | 3.6379788E-12 | 27.086828 | 5 |
TACGAAC | 85 | 1.4373336E-4 | 24.369396 | 63 |
GGTATCA | 9430 | 0.0 | 24.1832 | 1 |
TAGTGCG | 95 | 3.1342203E-4 | 21.719664 | 9 |
GTATCAA | 13080 | 0.0 | 21.687231 | 1 |
CCGTCGT | 100 | 4.4316155E-4 | 20.63368 | 9 |
CGTCCTA | 85 | 0.0041886293 | 20.237535 | 14 |
GGACCGT | 160 | 1.4087236E-6 | 19.339642 | 6 |
GAGTACT | 9060 | 0.0 | 19.168522 | 12 |
CGAACGC | 110 | 8.1983296E-4 | 18.832474 | 65 |
AACGCAG | 15400 | 0.0 | 18.597311 | 6 |
TCAACGC | 15665 | 0.0 | 18.479084 | 4 |
ATCAACG | 15715 | 0.0 | 18.469816 | 3 |
AGTACTT | 9200 | 0.0 | 18.465263 | 13 |
TACATGG | 12900 | 0.0 | 18.428778 | 2 |
CAACGCA | 15635 | 0.0 | 18.426586 | 5 |
TATCAAC | 15400 | 0.0 | 18.348476 | 2 |
GTACATG | 13180 | 0.0 | 18.225702 | 1 |
ACGCTAT | 115 | 0.0011350331 | 17.941957 | 13 |
ACATGGG | 13185 | 0.0 | 17.605896 | 3 |