Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033209_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3546242 |
Sequences flagged as poor quality | 0 |
Sequence length | 75 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 4665 | 0.0 | 36.511673 | 1 |
GTATCAA | 7425 | 0.0 | 24.98701 | 1 |
GTACATG | 9290 | 0.0 | 22.164963 | 1 |
TACATGG | 9315 | 0.0 | 21.32151 | 2 |
TACACCG | 390 | 0.0 | 21.219004 | 5 |
ATCAACG | 8895 | 0.0 | 20.506336 | 3 |
TCAACGC | 8980 | 0.0 | 20.312233 | 4 |
CAACGCA | 9240 | 0.0 | 19.815311 | 5 |
ACATGGG | 9600 | 0.0 | 19.611 | 3 |
TATCAAC | 9470 | 0.0 | 19.334051 | 2 |
AACGCAG | 9665 | 0.0 | 19.158028 | 6 |
GTGGTAT | 2370 | 0.0 | 18.367865 | 1 |
TAGCGCG | 135 | 1.584821E-4 | 17.878975 | 4 |
GAGTACA | 6555 | 0.0 | 17.39313 | 1 |
ACACCGT | 520 | 0.0 | 17.240442 | 6 |
CTACACT | 1105 | 0.0 | 16.850386 | 4 |
TGGTATC | 2405 | 0.0 | 16.631111 | 2 |
CGAACTA | 250 | 2.053821E-8 | 16.550825 | 29 |
ACGCAGA | 11565 | 0.0 | 15.921134 | 7 |
AGTACAT | 6475 | 0.0 | 15.869193 | 2 |