Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033208_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 4027778 |
Sequences flagged as poor quality | 0 |
Sequence length | 75 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 15724 | 0.390388943978541 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 4235 | 0.0 | 36.37012 | 1 |
GTATCAA | 7255 | 0.0 | 29.665226 | 1 |
ATCAACG | 8780 | 0.0 | 24.48616 | 3 |
TCAACGC | 8820 | 0.0 | 24.371765 | 4 |
CAACGCA | 9010 | 0.0 | 23.81965 | 5 |
TATCAAC | 9145 | 0.0 | 23.0737 | 2 |
AACGCAG | 9375 | 0.0 | 23.039303 | 6 |
GTACATG | 10115 | 0.0 | 22.961752 | 1 |
TACATGG | 9890 | 0.0 | 22.073725 | 2 |
ACATGGG | 10475 | 0.0 | 20.852345 | 3 |
ACGCAGA | 11060 | 0.0 | 19.28143 | 7 |
CGCAGAG | 11190 | 0.0 | 18.995953 | 8 |
GAGTACT | 7900 | 0.0 | 17.895304 | 12 |
AGAGTAC | 11780 | 0.0 | 17.373848 | 11 |
GTACGAC | 185 | 5.6092977E-6 | 16.73424 | 3 |
CAGAGTA | 12390 | 0.0 | 16.685051 | 10 |
AGTACTT | 8545 | 0.0 | 16.544931 | 13 |
GCAGAGT | 12630 | 0.0 | 16.531403 | 9 |
GTGGTAT | 2290 | 0.0 | 16.397692 | 1 |
TATACTG | 1710 | 0.0 | 16.090496 | 5 |