Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033206_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2330602 |
Sequences flagged as poor quality | 0 |
Sequence length | 75 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 8769 | 0.3762547187379055 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 3415 | 0.0 | 41.15067 | 1 |
GTATCAA | 6150 | 0.0 | 30.03348 | 1 |
GTGGTAT | 1475 | 0.0 | 25.23353 | 1 |
TCAACGC | 7570 | 0.0 | 24.53928 | 4 |
ATCAACG | 7605 | 0.0 | 24.519985 | 3 |
CAACGCA | 7705 | 0.0 | 24.153973 | 5 |
TGGTATC | 1520 | 0.0 | 23.796833 | 2 |
TATCAAC | 7805 | 0.0 | 23.305487 | 2 |
AACGCAG | 8105 | 0.0 | 22.919477 | 6 |
ACGCAGA | 9150 | 0.0 | 20.189543 | 7 |
CGCAGAG | 9310 | 0.0 | 19.768667 | 8 |
GTACATG | 6575 | 0.0 | 19.362951 | 1 |
AGAGTAC | 9280 | 0.0 | 18.832897 | 11 |
TACATGG | 6410 | 0.0 | 18.285265 | 2 |
GAGTACT | 6560 | 0.0 | 18.250586 | 12 |
CAGAGTA | 9635 | 0.0 | 18.246122 | 10 |
GCAGAGT | 9970 | 0.0 | 17.9436 | 9 |
ACATGGG | 6700 | 0.0 | 17.6646 | 3 |
ACACCGT | 275 | 2.055458E-10 | 17.512949 | 6 |
AGTACTT | 6875 | 0.0 | 17.014048 | 13 |