Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033205_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 851386 |
Sequences flagged as poor quality | 0 |
Sequence length | 75 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 3140 | 0.3688103868280663 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 860 | 0.10101176199749586 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 1935 | 0.0 | 35.195965 | 1 |
GTACCTG | 580 | 0.0 | 32.350685 | 1 |
TACCTGG | 570 | 0.0 | 30.478037 | 2 |
ATAACGC | 70 | 3.936005E-5 | 29.47564 | 3 |
GTATCAA | 3175 | 0.0 | 26.484352 | 1 |
ATCGTAC | 120 | 8.79445E-8 | 25.788141 | 11 |
GTCTCGC | 280 | 0.0 | 24.819311 | 1 |
TATAACG | 85 | 1.3752075E-4 | 24.525856 | 2 |
TCTGTCG | 295 | 0.0 | 24.475437 | 8 |
TCTCGCT | 290 | 0.0 | 23.962044 | 2 |
CTGTCGC | 335 | 0.0 | 22.580662 | 9 |
CGCTCTG | 345 | 0.0 | 21.924854 | 5 |
GCTATAC | 95 | 3.1326586E-4 | 21.718891 | 3 |
TACCGTG | 95 | 3.1364095E-4 | 21.715048 | 5 |
TAACGCA | 80 | 0.0029569296 | 21.488852 | 4 |
ATCAACG | 3935 | 0.0 | 21.323336 | 3 |
TCAACGC | 3995 | 0.0 | 21.08543 | 4 |
TCGCTCT | 395 | 0.0 | 20.890429 | 4 |
TATCAAC | 3935 | 0.0 | 20.749851 | 2 |
CAACGCA | 4055 | 0.0 | 20.688648 | 5 |