Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033204_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1959191 |
Sequences flagged as poor quality | 0 |
Sequence length | 75 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 7780 | 0.39710268166809665 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 3205 | 0.0 | 33.5125 | 1 |
GTATCAA | 5495 | 0.0 | 29.794054 | 1 |
ATCAACG | 6920 | 0.0 | 24.358599 | 3 |
TCAACGC | 7060 | 0.0 | 23.87128 | 4 |
CAACGCA | 7175 | 0.0 | 23.536608 | 5 |
TATCAAC | 7060 | 0.0 | 23.235184 | 2 |
AACGCAG | 7495 | 0.0 | 22.532866 | 6 |
GTGGTAT | 1585 | 0.0 | 22.369036 | 1 |
CGAACTA | 100 | 4.3127182E-4 | 20.716726 | 29 |
GTACATG | 5525 | 0.0 | 20.572725 | 1 |
TGGTATC | 1675 | 0.0 | 19.918894 | 2 |
ACGCAGA | 8470 | 0.0 | 19.737026 | 7 |
CGCAGAG | 8550 | 0.0 | 19.552353 | 8 |
TACATGG | 5560 | 0.0 | 19.502424 | 2 |
GAGTACT | 6040 | 0.0 | 19.307457 | 12 |
AGAGTAC | 8395 | 0.0 | 19.094854 | 11 |
AGTACTT | 6145 | 0.0 | 18.865103 | 13 |
ACATGGG | 5795 | 0.0 | 18.817768 | 3 |
TAGACTG | 495 | 0.0 | 18.760433 | 5 |
CAGAGTA | 8920 | 0.0 | 18.24095 | 10 |