Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033196_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2944878 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5345 | 0.18150157663577235 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4304 | 0.14615206470352932 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 4000 | 0.0 | 53.39463 | 1 |
GTATCAA | 7515 | 0.0 | 42.88084 | 1 |
TCAACGC | 8520 | 0.0 | 36.91166 | 4 |
ATCAACG | 8575 | 0.0 | 36.729725 | 3 |
CAACGCA | 8825 | 0.0 | 35.74249 | 5 |
TATCAAC | 9220 | 0.0 | 34.517727 | 2 |
AACGCAG | 9240 | 0.0 | 34.280483 | 6 |
ACGCAGA | 10675 | 0.0 | 29.452168 | 7 |
CGCAGAG | 10865 | 0.0 | 28.805897 | 8 |
GTACATG | 7430 | 0.0 | 26.592686 | 1 |
TACATGG | 7255 | 0.0 | 26.047922 | 2 |
GCAGAGT | 12035 | 0.0 | 25.770767 | 9 |
ACATGGG | 7790 | 0.0 | 23.5948 | 3 |
GTGGTAT | 2055 | 0.0 | 22.434477 | 1 |
GAGTACT | 8455 | 0.0 | 22.398605 | 12-13 |
CAGAGTA | 12090 | 0.0 | 21.164164 | 10-11 |
AGAGTAC | 11145 | 0.0 | 20.555311 | 10-11 |
TACACCG | 260 | 1.6820195E-8 | 19.88824 | 5 |
GGTCGCG | 190 | 9.056041E-6 | 19.787704 | 7 |
ATACCGC | 215 | 1.1963166E-6 | 19.67266 | 6 |