Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033188_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2989058 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3426 | 0.1146180502352246 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 3855 | 0.0 | 44.801884 | 1 |
GTATCAA | 6115 | 0.0 | 40.403355 | 1 |
TCAACGC | 7045 | 0.0 | 34.03186 | 4 |
ATCAACG | 7250 | 0.0 | 33.06958 | 3 |
CAACGCA | 7265 | 0.0 | 32.93659 | 5 |
AACGCAG | 7485 | 0.0 | 31.896101 | 6 |
TATCAAC | 7790 | 0.0 | 31.199636 | 2 |
GTGGTAT | 1760 | 0.0 | 28.34313 | 1 |
GTACATG | 10010 | 0.0 | 27.54978 | 1 |
ACGCAGA | 8880 | 0.0 | 26.832474 | 7 |
CGCAGAG | 9210 | 0.0 | 25.66565 | 8 |
TACATGG | 10245 | 0.0 | 25.650532 | 2 |
ACATGGG | 10510 | 0.0 | 23.885538 | 3 |
GCAGAGT | 10380 | 0.0 | 22.591606 | 9 |
GTATAGG | 895 | 0.0 | 22.084156 | 1 |
CATGGGG | 8485 | 0.0 | 21.05369 | 4 |
TGGTATC | 2255 | 0.0 | 20.638834 | 2 |
GAGTACA | 6535 | 0.0 | 20.091537 | 1 |
CAGAGTA | 10065 | 0.0 | 19.306595 | 10-11 |
AGAGTAC | 9370 | 0.0 | 18.93308 | 10-11 |