Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033187_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1496970 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2902 | 0.19385826035257886 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2427 | 0.162127497545041 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 2300 | 0.0 | 52.166977 | 1 |
GTATCAA | 4200 | 0.0 | 43.35558 | 1 |
TCAACGC | 4835 | 0.0 | 36.850945 | 4 |
ATCAACG | 4910 | 0.0 | 36.47954 | 3 |
CAACGCA | 5040 | 0.0 | 35.445328 | 5 |
TATCAAC | 5220 | 0.0 | 34.583313 | 2 |
AACGCAG | 5240 | 0.0 | 34.17189 | 6 |
TAGACCG | 60 | 0.004156316 | 31.34113 | 5 |
ACGCAGA | 5840 | 0.0 | 30.500132 | 7 |
CGCAGAG | 5855 | 0.0 | 30.261452 | 8 |
TCTGTCG | 435 | 0.0 | 27.010094 | 8 |
CGACCGT | 35 | 0.008839043 | 26.856646 | 20-21 |
GTACATG | 3760 | 0.0 | 26.779919 | 1 |
GCAGAGT | 6670 | 0.0 | 26.422916 | 9 |
ACATGGG | 3650 | 0.0 | 24.858238 | 3 |
TACATGG | 3825 | 0.0 | 24.827091 | 2 |
GTGGTAT | 1095 | 0.0 | 23.204008 | 1 |
GAGTACT | 4765 | 0.0 | 22.833023 | 12-13 |
CTGTCGC | 440 | 0.0 | 22.430656 | 9 |
CAGAGTA | 6570 | 0.0 | 21.638906 | 10-11 |