Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033185_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3396784 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3962 | 0.11663973923570059 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 4200 | 0.0 | 46.065063 | 1 |
GTATCAA | 7405 | 0.0 | 41.32068 | 1 |
TCAACGC | 8335 | 0.0 | 35.87087 | 4 |
ATCAACG | 8465 | 0.0 | 35.542126 | 3 |
CAACGCA | 8655 | 0.0 | 34.598938 | 5 |
AACGCAG | 9020 | 0.0 | 33.188606 | 6 |
TATCAAC | 9305 | 0.0 | 32.5862 | 2 |
GTACATG | 10155 | 0.0 | 29.296537 | 1 |
ACGCAGA | 10420 | 0.0 | 28.323572 | 7 |
CGCAGAG | 10650 | 0.0 | 27.753973 | 8 |
TACATGG | 10375 | 0.0 | 27.186512 | 2 |
ACATGGG | 10830 | 0.0 | 24.872335 | 3 |
GCAGAGT | 12120 | 0.0 | 23.922506 | 9 |
CATGGGG | 7165 | 0.0 | 21.389065 | 4 |
GAGTACA | 7155 | 0.0 | 20.329561 | 1 |
CAGAGTA | 11645 | 0.0 | 19.974848 | 10-11 |
AGAGTAC | 11020 | 0.0 | 19.807142 | 10-11 |
GAGTACT | 7630 | 0.0 | 19.492472 | 12-13 |
GTGGTAT | 2295 | 0.0 | 19.485882 | 1 |
CGTATAC | 225 | 1.8437458E-6 | 18.804007 | 3 |