Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033182_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2059802 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3198 | 0.15525764126843258 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2888 | 0.14020765102665209 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 2795 | 0.0 | 54.218346 | 1 |
GTATCAA | 5180 | 0.0 | 41.156708 | 1 |
ATCAACG | 5795 | 0.0 | 36.01948 | 3 |
TCAACGC | 5790 | 0.0 | 35.888195 | 4 |
CAACGCA | 5935 | 0.0 | 34.852974 | 5 |
AACGCAG | 6165 | 0.0 | 33.540485 | 6 |
TATCAAC | 6355 | 0.0 | 33.06739 | 2 |
CGCAGAG | 6970 | 0.0 | 29.395603 | 8 |
ACGCAGA | 7020 | 0.0 | 29.321537 | 7 |
CGAACCG | 65 | 0.0061476696 | 28.930407 | 5 |
GCAGAGT | 8005 | 0.0 | 25.183992 | 9 |
TACATGG | 4820 | 0.0 | 24.676378 | 2 |
GTACATG | 4930 | 0.0 | 24.247055 | 1 |
TATACCG | 160 | 2.0356201E-6 | 23.505957 | 5 |
ACATGGG | 4880 | 0.0 | 23.120611 | 3 |
GAGTACT | 5575 | 0.0 | 22.800852 | 12-13 |
ATACCGT | 280 | 7.6397555E-11 | 21.819012 | 6 |
CAGAGTA | 8015 | 0.0 | 21.429522 | 10-11 |
AGAGTAC | 7330 | 0.0 | 20.867752 | 10-11 |
ATACCGG | 160 | 5.4201522E-5 | 20.560223 | 6 |