Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033180_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2660110 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 2175 | 0.0 | 35.519627 | 1 |
TCAACGC | 3310 | 0.0 | 32.213547 | 4 |
GTATCAA | 3565 | 0.0 | 32.10928 | 1 |
ATCAACG | 3360 | 0.0 | 31.600327 | 3 |
CAACGCA | 3475 | 0.0 | 30.819157 | 5 |
AACGCAG | 3685 | 0.0 | 28.926668 | 6 |
GTACATG | 7305 | 0.0 | 26.052235 | 1 |
TATCAAC | 4260 | 0.0 | 25.60083 | 2 |
TACATGG | 7370 | 0.0 | 24.684204 | 2 |
ACGCAGA | 4330 | 0.0 | 24.075941 | 7 |
ACATGGG | 7690 | 0.0 | 22.726835 | 3 |
CGCAGAG | 4530 | 0.0 | 22.702002 | 8 |
CATGGGG | 5015 | 0.0 | 18.826336 | 4 |
GTATAGG | 955 | 0.0 | 18.25081 | 1 |
GCAGAGT | 5490 | 0.0 | 18.133505 | 9 |
GTATTAG | 1405 | 0.0 | 17.769833 | 1 |
GAGTACA | 5425 | 0.0 | 17.540236 | 1 |
TAGACGG | 270 | 5.4854536E-7 | 17.397104 | 5 |
CTAGACG | 220 | 3.2133823E-5 | 17.080791 | 4 |
CTACACT | 1395 | 0.0 | 16.835907 | 4 |