Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033179_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3736057 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6436 | 0.17226717900717253 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5705 | 0.15270109636978238 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 13325 | 0.0 | 32.60002 | 1 |
GGTATCA | 9310 | 0.0 | 32.302383 | 1 |
TCAACGC | 15910 | 0.0 | 27.06792 | 4 |
GTACATG | 15730 | 0.0 | 26.98741 | 1 |
ATCAACG | 15945 | 0.0 | 26.979021 | 3 |
CAACGCA | 16170 | 0.0 | 26.632336 | 5 |
AACGCAG | 16565 | 0.0 | 26.014856 | 6 |
TACATGG | 16045 | 0.0 | 25.844616 | 2 |
TATCAAC | 17310 | 0.0 | 25.01519 | 2 |
ACATGGG | 16980 | 0.0 | 23.839386 | 3 |
ACGCAGA | 18715 | 0.0 | 22.87558 | 7 |
CGCAGAG | 19605 | 0.0 | 21.765196 | 8 |
CATGGGG | 12980 | 0.0 | 21.696104 | 4 |
AGAGTAC | 15720 | 0.0 | 20.641863 | 10-11 |
GCAGAGT | 20560 | 0.0 | 20.388227 | 9 |
GAGTACT | 9510 | 0.0 | 19.543562 | 12-13 |
GAGTACA | 10900 | 0.0 | 19.42985 | 1 |
GTACTTT | 9615 | 0.0 | 18.89026 | 14-15 |
CTAGCGT | 230 | 2.2731092E-6 | 18.396883 | 4 |
GTATAGA | 1160 | 0.0 | 18.257357 | 1 |