Basic Statistics
Measure | Value |
---|---|
Filename | SRR1033176_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2784801 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 3175 | 0.0 | 33.53771 | 1 |
TCAACGC | 3075 | 0.0 | 31.777597 | 4 |
GGTATCA | 2020 | 0.0 | 31.021936 | 1 |
ATCAACG | 3150 | 0.0 | 30.72878 | 3 |
CAACGCA | 3230 | 0.0 | 30.397018 | 5 |
AACGCAG | 3510 | 0.0 | 28.095425 | 6 |
GTACATG | 7260 | 0.0 | 27.646595 | 1 |
TACATGG | 7245 | 0.0 | 25.631945 | 2 |
TATCAAC | 4125 | 0.0 | 24.617994 | 2 |
TACACCG | 290 | 0.0 | 24.298557 | 5 |
ACATGGG | 7465 | 0.0 | 24.170748 | 3 |
ACGCAGA | 4310 | 0.0 | 22.008858 | 7 |
CGCAGAG | 4285 | 0.0 | 21.91887 | 8 |
TATACCG | 245 | 8.554707E-9 | 21.09181 | 5 |
CATGGGG | 4760 | 0.0 | 20.725985 | 4 |
GTACTAG | 670 | 0.0 | 18.28383 | 1 |
GCAGAGT | 5460 | 0.0 | 17.02988 | 9 |
CCTACAC | 1115 | 0.0 | 16.43533 | 3 |
GTATAGA | 1150 | 0.0 | 16.388184 | 1 |
TAGACTG | 1360 | 0.0 | 15.889351 | 5 |